Compartmental Modeling
Networks
Modeling
- Random Graph
- Watts-Strogatz Small World
- Barabási-Albert Scale-Free
- Can
- Chord
- Hypergrid
- PRU
- TARL (Topics, Aging and Recursive Linking)
- Discrete Network Dynamics (DND)
- Evolving Network (weighted)
Preprocessing
- Extract Timestamp
- Extract Top Nodes
- Extract Nodes Above or Below Value
- Remove Node Attributes
- Delete High Degree Nodes
- Delete Random Nodes
- Delete Isolates
- Extract Top Edges
- Extract Edges Above or Below Value
- Remove Edge Attributes
- Remove Self Loops
- Trim By Degree
- Snowball Sampling (N nodes)
- Node Sampling
- Edge Sampling
- Symmetrize
- Dichotomize
- Multipartite Joining
- Lowercase, Tokenize, Stem, and Stopword Text
- Slice Table by Time
Analysis
Unweigted and Undirected
- Node Degree
- Degree Distribution
- Watts-Strogatz Clustering Coefficient
- Watts Strogatz Clustering Coefficient over K
- Diameter
- Average Shortest Path
- Shortest Path Distribution
- Node Betweeness Centrality
- Global Connected Components
- HITS
- Weak Component Clustering
- Blondel Community Detection
- MST-Pathfinder Network Scaling
- Extract K-Core
- Annotate K-Coreness
Weighted and Undirected
- Clustering Coefficient
- Nearest Neighbor Degree
- Strength vs Degree
- Degree & Strength
- Average Weight vs End-point Degree
- K-Nearest Neighbor (Java)
- Strength Distribution
- Weight Distribution
- Randomize Weights
- PageRank
- HITS
- MST-Pathfinder Network Scaling
- Fast Pathfinder Network Scaling
- Blondel Community Detection
Unweighted and Directed
- Node Indegree
- Node Outdegree
- Indegree Distribution
- Outdegree Distribution
- K-Nearest Neighbor
- Single Node In-Out Degree
- PageRank
- HITS
- Dyad Reciprocity
- Arc Reciprocity
- Adjacency Transitivity
- Weak Component Clustering
- Strong Component Clustering
- Blondel Community Detection
- Extract K-Core
- Annotate K-Coreness
Weighted and Directed
Discrete Network Dynamics
Simulation
Single Population
Network
Visualization
- GUESS
- GnuPlot
- DrL (VxOrd)
- Specified (prefuse beta)
- Circular (JUNG)
- Radial Tree/Graph (prefuse alpha)
- Radial Tree/Graph with Annotation (prefuse beta)
- Tree Map (prefuse beta)
- Tree View (prefuse beta)
- Balloon Graph (prefuse alpha)
- Force Directed with Annotation (prefuse beta)
- Kamanda-Kawai (JUNG)
- Fruchterman-Reingold (JUNG)
- Fruchterman-Reingold with Annotations (prefuse beta)
- Spring (JUNG)
- Small World (prefuse alpha)
- Parallel Coordinates (demo)
- LaNet
- Circular Hierarchy
- Line Graph